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CRAN: Package SoupX

SoupX: Single Cell mRNA Soup eXterminator

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Version: 1.6.2 Depends: R (≥ 3.5.0) Imports: ggplot2, Matrix, methods, Seurat (≥ 3.2.2) Suggests: knitr, rstan, DropletUtils, rmarkdown, formatR Published: 2022-11-01 DOI: 10.32614/CRAN.package.SoupX Author: Matthew Daniel Young Maintainer: Matthew Daniel Young <my4 at sanger.ac.uk> License: GPL-2 URL: https://github.com/constantAmateur/SoupX NeedsCompilation: no Citation: SoupX citation info Materials: README In views: Omics CRAN checks: SoupX results Documentation: Reference manual: SoupX.pdf Vignettes: PBMC Demonstration (source, R code)
Downloads: Package source: SoupX_1.6.2.tar.gz Windows binaries: r-devel: SoupX_1.6.2.zip, r-release: SoupX_1.6.2.zip, r-oldrel: SoupX_1.6.2.zip macOS binaries: r-release (arm64): SoupX_1.6.2.tgz, r-oldrel (arm64): SoupX_1.6.2.tgz, r-release (x86_64): SoupX_1.6.2.tgz, r-oldrel (x86_64): SoupX_1.6.2.tgz Old sources: SoupX archive Reverse dependencies: Reverse imports: singleCellTK Reverse suggests: CRMetrics Linking:

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