A computational method developed for model-based analysis of alternative polyadenylation (APA) using 3' end-linked reads. It accurately assigns 3' RNA-seq reads to polyA sites through statistical modeling, and generates multiple statistics for APA analysis. Please also see Li WV, Zheng D, Wang R, Tian B (2021) <doi:10.1186/s13059-021-02429-5>.
Version: 1.1.1 Imports: parallel, GenomicRanges, GenomicAlignments, GenomicFeatures, GenomeInfoDb, stats, utils, Rsamtools, IRanges, MASS Suggests: knitr, rmarkdown Published: 2021-08-14 DOI: 10.32614/CRAN.package.MAAPER Author: Wei Vivian Li [aut, cre] Maintainer: Wei Vivian Li <vivian.li at rutgers.edu> License: GPL-3 URL: https://github.com/Vivianstats/MAAPER, https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02429-5 NeedsCompilation: no In views: Omics CRAN checks: MAAPER results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=MAAPER to link to this page.
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