Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), <doi:10.1101/627307>), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.
Version: 1.4 Depends: R (≥ 3.5.0) Imports: data.table, devtools, dplyr, ggplot2, Peptides, plyr, rappdirs, readr, stringr, tibble, Rcpp LinkingTo: Rcpp Suggests: testthat, knitr, markdown, rmarkdown, profvis Published: 2023-04-06 DOI: 10.32614/CRAN.package.pureseqtmr Author: Richèl J.C. Bilderbeek [aut, cre] Maintainer: Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> BugReports: https://github.com/richelbilderbeek/pureseqtmr/ License: GPL-3 URL: https://github.com/richelbilderbeek/pureseqtmr/ NeedsCompilation: yes SystemRequirements: PureseqTM (https://github.com/PureseqTM/pureseqTM_package) CRAN checks: pureseqtmr results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=pureseqtmr to link to this page.
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