Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. (2020) <doi:10.1098/rsif.2020.0084>).
Version: 1.1.3 Depends: R (≥ 3.5.0) Imports: Rcpp, methods, stats, grDevices, geosphere, ggplot2, visNetwork, data.table, outbreaker2 LinkingTo: Rcpp Suggests: testthat, tigris, sf, knitr, socialmixr, rmarkdown Published: 2024-06-21 DOI: 10.32614/CRAN.package.o2geosocial Author: Alexis Robert [aut, cre, cph], Sebastian Funk [aut], Adam J Kucharski [aut], Thibaut Jombart [ctb] Maintainer: Alexis Robert <alexis.robert at lshtm.ac.uk> BugReports: https://github.com/alxsrobert/o2geosocial/issues License: MIT + file LICENSE URL: https://github.com/alxsrobert/o2geosocial NeedsCompilation: yes Materials: README NEWS In views: Epidemiology CRAN checks: o2geosocial results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=o2geosocial to link to this page.
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