An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, 'SCORPIUS' provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.
Version: 1.0.9 Depends: R (≥ 3.5.0) Imports: dplyr, dynutils (≥ 1.0.3), dynwrap, grDevices, ggplot2 (≥ 2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap, princurve (≥ 2.1.4), purrr, ranger, RANN, RColorBrewer, reshape2, stats, tidyr, TSP Suggests: anndata, covr, knitr, reticulate, rmarkdown, Seurat, SingleCellExperiment, testthat (≥ 2.1.0) Published: 2023-08-07 DOI: 10.32614/CRAN.package.SCORPIUS Author: Robrecht Cannoodt [aut, cre] (github: rcannood), Wouter Saelens [ctb] (github: zouter) Maintainer: Robrecht Cannoodt <rcannood at gmail.com> BugReports: https://github.com/rcannood/SCORPIUS/issues License: GPL-3 URL: https://github.com/rcannood/SCORPIUS, http://rcannood.github.io/SCORPIUS/ NeedsCompilation: no Citation: SCORPIUS citation info Materials: README NEWS In views: Omics CRAN checks: SCORPIUS resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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