Provides a flexible container to manage and annotate Differential Gene Expression (DGE) analysis results (Smythe et. al (2015) <doi:10.1093/nar/gkv007>). The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows by m-samples dimensions) and metadata (not keyed to row, col, or assays). A set of accessory functions to deposit, query and retrieve subsets of a data workflow has been provided. Attributes are used to capture metadata such as species and gene model, including reproducibility information such that a 3rd party can access a DGEobj history to see how each data object was created or modified. Since the DGEobj is customizable and extensible it is not limited to RNA-seq analysis types of workflows – it can accommodate nearly any data analysis workflow that starts from a matrix of assays (rows) by samples (columns).
Version: 1.1.2 Depends: R (≥ 3.5.0) Imports: assertthat, magrittr, stringr, utils Suggests: biomaRt, conflicted, dplyr, edgeR, GenomicRanges, glue, knitr, rmarkdown, testthat Published: 2022-05-16 DOI: 10.32614/CRAN.package.DGEobj Author: John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut] Maintainer: Connie Brett <connie at aggregate-genius.com> License: GPL-3 NeedsCompilation: no Language: en-US Materials: README NEWS In views: Omics CRAN checks: DGEobj results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=DGEobj to link to this page.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4