A toolkit for working with Biological Observation Matrix ('BIOM') files. Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and beta diversity (including 'UniFrac'). Summarize counts by taxonomic level. Subset based on metadata. Generate visualizations and statistical analyses. CPU intensive operations are coded in C for speed.
Version: 2.2.1 Depends: R (≥ 4.2.0) Imports: methods, mgcv, stats, utils, ape, dplyr, emmeans, fillpattern, ggbeeswarm, ggnewscale, ggplot2, ggrepel, ggtext, jsonlite, magrittr, parallelly, patchwork, pillar, plyr, readr, readxl, slam, vegan Suggests: cli, crayon, ggdensity, glue, labeling, lifecycle, openxlsx, optparse, pkgconfig, prettycode, R6, rlang, scales, testthat, tibble, tsne, uwot Published: 2025-06-27 DOI: 10.32614/CRAN.package.rbiom Author: Daniel P. Smith [aut, cre], Alkek Center for Metagenomics and Microbiome Research [cph, fnd] Maintainer: Daniel P. Smith <dansmith01 at gmail.com> BugReports: https://github.com/cmmr/rbiom/issues License: MIT + file LICENSE URL: https://cmmr.github.io/rbiom/, https://github.com/cmmr/rbiom NeedsCompilation: yes Materials: README CRAN checks: rbiom results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=rbiom to link to this page.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4