An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.
Version: 0.99.7 Depends: R (≥ 3.5.0), methods Imports: concaveman, sf, sp, spatstat.geom, parallel, pdist, MASS, S4Vectors, stats, Matrix, Morpho, matrixStats, plotly, shiny, viridis, shinydashboard, dashboardthemes, shinyBS, ggplot2, ggpubr, DT, spatstat.random, magrittr, FNN, dplyr, magick Suggests: knitr, rmarkdown, BiocStyle, RefManageR, BiocManager, sessioninfo Published: 2024-08-21 DOI: 10.32614/CRAN.package.SRTsim Author: Jiaqiang Zhu [aut, ctb, cre], Lulu Shang [aut], Xiang Zhou [aut] Maintainer: Jiaqiang Zhu <jiaqiang at umich.edu> License: GPL (≥ 3) NeedsCompilation: no CRAN checks: SRTsim resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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