A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) <doi:10.1099/vir.0.069906-0>, Li et al. (2020) <doi:10.1038/s41598-021-96127-8>, Rowden et al. (2023) <doi:10.3390/pathogens12020309>, Haley et al. (2013) <doi:10.1371/journal.pone.0081488>, and Mair and Wilcox (2020) <doi:10.3758/s13428-019-01246-w>. Please refer to the original publications for details.
Version: 0.1.2 Depends: R (≥ 4.1.0) Imports: WRS2, magrittr, graphics, stats, ggplot2, methods, dplyr, tidyr, tidyselect, rlang, readxl Suggests: testthat (≥ 3.0.0) Published: 2024-09-02 DOI: 10.32614/CRAN.package.QuICSeedR Author: Manci Li [aut, cre] Maintainer: Manci Li <li000021 at umn.edu> License: GPL-3 | file LICENSE Copyright: Manci Li NeedsCompilation: no Materials: README CRAN checks: QuICSeedR results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=QuICSeedR to link to this page.
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