A toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA 'GitHub' repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods.
Version: 1.6.2 Depends: R (≥ 3.6.0) Imports: DescTools, dplyr, fmsb, rvest, stats, stringr, tibble, utils, xfun Suggests: knitr, rmarkdown, testthat (≥ 3.0.0) Published: 2025-05-01 DOI: 10.32614/CRAN.package.HLAtools Author: Livia Tran [aut], Ryan Nickens [aut], Leamon Crooms IV [aut], Derek Pappas [aut], Vinh Luu [ctb], Josh Bredeweg [ctb], Steven Mack [aut, cre] Maintainer: Steven Mack <Steven.Mack at ucsf.edu> License: GPL (≥ 3) URL: <https://github.com/sjmack/HLAtools> NeedsCompilation: no Materials: README NEWS CRAN checks: HLAtools results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=HLAtools to link to this page.
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