A toolkit for Flux Balance Analysis and related metabolic modeling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps. For a background on the theory, see What is Flux Balance Analysis <doi:10.1038/nbt.1614>.
Version: 0.6.0 Depends: R (≥ 3.3.0) Imports: assertthat, dplyr, magrittr, Matrix, purrr, rlang, ROI, ROI.plugin.ecos, stringr, tibble, tidyr Suggests: spelling, jsonlite, curl, knitr, rmarkdown, testthat Published: 2020-09-02 DOI: 10.32614/CRAN.package.fbar Author: Max Conway [aut, cre] Maintainer: Max Conway <conway.max1 at gmail.com> BugReports: https://github.com/maxconway/fbar/issues License: GPL-3 URL: http://maxconway.github.io/fbar/, https://github.com/maxconway/fbar NeedsCompilation: no Language: en-GB Materials: README NEWS In views: Omics CRAN checks: fbar results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=fbar to link to this page.
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