Implementation of the scregclust algorithm described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3> which reconstructs regulatory programs of target genes in scRNA-seq data. Target genes are clustered into modules and each module is associated with a linear model describing the regulatory program.
Version: 0.2.0 Depends: R (≥ 3.5.0) Imports: Matrix, stats, methods, utils, reshape, igraph, graphics, grid, cli, prettyunits, ggplot2, rlang, Rcpp (≥ 1.0.8) LinkingTo: Rcpp, RcppEigen Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), Seurat (≥ 5.0.0), glmGamPoi, hdf5r Published: 2024-12-06 DOI: 10.32614/CRAN.package.scregclust Author: Felix Held [aut, cre], Ida Larsson [aut], Sven Nelander [aut], André Armatowski [ctb] Maintainer: Felix Held <felix.held at gmail.com> BugReports: https://github.com/scmethods/scregclust/issues License: GPL (≥ 3) URL: https://scmethods.github.io/scregclust/, https://github.com/scmethods/scregclust/ NeedsCompilation: yes Citation: scregclust citation info Materials: README NEWS CRAN checks: scregclust results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=scregclust to link to this page.
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