mppR is an R package to perform QTL analysis of experimental multi-parent populations. The population must be composed of crosses between a set of at least three parents (e.g. factorial design, âdiallelâ, or nested association mapping). The functions cover data processing, QTL detection, and results visualization.
InstallationmppR has two different branches: âmasterâ and âmppR_CRANâ. The âmasterâ branch allows to perform MPP mixed model QTL detection calling the asreml-R package and function parent_cluster.mppData that call the archived R package clusthaplo for parent clustering. The branch âmppR_CRANâ do not contain the mixed models and the call to clusthaplo.
devtools::install_github("vincentgarin/mppR", ref = "master")
See the two vignettes attached to the package.
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