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NEWS

• Removed an example from ParsePlot as temp saving caused errors on some platforms

• Added a code of conduct
• Adapted examples to improve run time of rcmdcheck
• Moved away from Travis CI to Github Actions
• Changed some urls that had moved hosting
• Adapted kappa function to handle binary values

• Made PlotParam more flexible for different kinds of parameter values
• Fixed FlattenList function for complex nested lists with contents other than list of lists

• moved inst/doc to inst/extdata/doc
• moved LICENSE.md to inst/extdata/LICENSE.md

• Sync with CRAN

• added FindEnvironment function to find the environment of a selected variable
• added ChangeNames function to change names, colnames or rownames of single items or a list of items
• Updated ParseNumber function to optionally extract numeric values with decimals
• @davidgohel adapted ParsePlot to conform with changes in officer and rvg packages

• Updated ParsePlot function to conform with changes in rvg package: Part Deux

• Updated ParsePlot function to conform with changes in rvg package
• Fixed circlize function

• Fixed an sorting error in contrasts function

• Added the ability to use custom save names
• Removed the appended “Plot” in save names for ParsePlot function

• Fixed factor-to-numeric-bug metric function

• Added InverseHDI function to compute inverse cumulative density function of the distribution

• Added option to add results to ETA function

• Added PlotParam function to plot density of parameter values (including ROPE)

• Removed PlotData function. All plots are now called from seperate functions:
  • PlotCirclize to create a circlize plot
  • PlotMean to create a mean plot
  • PlotNominal to create a nominal plot
  • PlotParam to create a density plot with parameter values

• Small fix in SumMCMC function to compute sample sizes

• Updated CFA function to include correlation matrix
• Added a option to run PPP for every kth length of MCMC chains (Default is every 10th)

• Optimized RunContrasts to allow larger MCMC simulations (2nd review)

• Fixed plot_data vignette
• Updated README
• Fixed title bug in circlize plots
• Added RemoveGarbage function to clear up working memory
• Added MultiGrep function to use multiple patterns to select an element from a vector
• Fixed bug in kappa function
• Fixed bug in covariate function
• Fixed inline comment bug in TidyCode function
• Added option to define which parameters to use for diagnostics
• Removed (some of the…) unnecessary arguments in bfw function
• Added a apa PowerPoint template

• Added nominal and circlize (using the circlize package) plot types
  • mean plots are now seperated from main PlotData function
  • ParsePlot and PlotData functions are also seperated

• Fixed an error in nominal function

• Fixed variables namnes in nominal function when using only 1 variable

• Fixed issue of line break after HTML tags when rendering Rmd files.

• Fixed ParsePlot to accommodate ggplots.
  • PlotData now returns ggplot2 and not grDevices::recordPlot()

• Added a second badge, a more informative badge, ’cos why not.

• Some typos

• Added a badge because all the cool kids have them
• Fixed small inconsistencies in ParsePlot parameters (i.e., type png with layout pw).
  • Defaults are now rasterized pdf on a4 layout with 12 pointsize.

• Optimized RunContrasts to allow larger MCMC simulations

• Optimized ParsePlot to handle large amounts of plots
• Added png package to Suggests to handle rasterized graphics for pdf/ps.
• Created a small function called TidyCode to format messy code.
• Modified nominal and metric functions to use a single flexible jags model for each function respectively
• Added an extended covariate function to include y and x variables.
• Redefined fit data models
  • Created a separate model for confirmatory factor analysis using Wishart distribution
  • Redefined structural equation models, making the models more efficient
• Added options to have more control over JAGS simulations
  • jags.method, specify method for JAGS (e.g., parallel or simple)
  • jags.chains, specify specify number of chains for JAGS
  • adapt.steps, the number of adaptive iterations to use at the start of each simulation
  • burnin.steps, the number of burnin iterations, NOT including the adaptive iterations to use for the simulation.

• Added a small ETA function to display running time of functions
• Made feedback from MCMC functions more informative
• Fixed custom model in settings
• Fixed job.title bug in covariate
• Fixed NULL values in TrimSplit and CapWords
• Replaced robust estimates of R^2 with Spearman
• Moved vignettes from vignettes to doc

• Migrated from the orphaned ReporteRs to officer (thanks to Professor Brian Ripley at University of Oxford for notifying me)
  • Added two PowerPoint templates legacy (4:3) and widescreen (16:9)
• The following packages are moved from Imports to Suggests
  • ggplot2
  • lavaan
  • officer
  • psych
  • robust
  • rvg
  • scales
  • truncnorm

• Modified title of package from Computational Modelling to Computational Modeling to conform with US spelling
• Recoded diagnostics, making the code more efficent.
• Correcting some typos and code aesthetics (e.g., replaced print with cat to display running time of analyses)
• Reviewed TrimSplit function to include removing empty elements from vector
• Removed methods and rJava from imports

• Initial launch with the following modules:
  • Bernoulli trials
  • Covariate estimations (including correlation and Cronbach`s alpha)
  • Fit data (e.g., SEM, CFA, mediation models)
  • Bayesian equivalent of Cohen`s kappa
  • Mean and standard deviation estimations
  • Predict metric values (cf., ANOVA)
  • Predict nominal values (c.f., chi-square test)
  • Simple, multiple and hierarchical regression
  • Softmax regression (i.e., multinomial logistic regression)
• Added a NEWS.md file to track changes to the package.
• Added a TODO.md file to track future work on the package.
• Added a README.md file as an introduction to the package.

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