Change from sample_admb to sample_nuts and sample_rwm to run the NUTS and RWM algorithms, respectively.

Rework metric options to allow user to access ADMB 12.2’s new dense mass matrix adaptation scheme. Added new section demonstrating this in the vignette.

Add more control to via ‘skip_monitor’, ‘skip_unbounded’, and ‘skip_optimization’ arguments

Remove TMB references from documentation and vignette, instead pointing users to package ‘tmbstan’, and collate deprecated R code into a single file

Migrate to new github repo: github.com/Cole-Monnahan-NOAA per NOAA’s policy

Add testing via testthat package

Turn on calculation of ESS and Rhat manually, which get used in subsequent functions

Created S3 class ‘adfit’ and generic methods print, summary, and plot

Updated pairs_admb to have an ‘order’ argument for quickly plotting slow/fast parameters

Add new function plot_marginals for quickly plotting posterior histograms

Add new function plot_sampler_params to plot NUTS sampling

Make parallel the default and deprecate the ‘parallel’ argument.

Fix bug in parallel path which failed when it was absolute. Now can be relative or absolute.

Add check for valid version of ADMB

Minor bug fixes and documentation updates

Improve error handling and testing routines