Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
Version: 0.68.0 Depends: R (≥ 3.2.0) Imports: R.methodsS3 (≥ 1.8.2), R.oo (≥ 1.25.0), R.utils (≥ 2.12.0), R.cache (≥ 0.16.0), matrixStats (≥ 0.62.0), aroma.light (≥ 2.4.0), DNAcopy (≥ 1.42.0), future (≥ 1.28.0), parallel, graphics, grDevices, stats, utils Suggests: R.rsp (≥ 0.45.0), R.devices (≥ 2.17.1), ggplot2 (≥ 3.2.1) Published: 2025-04-18 DOI: 10.32614/CRAN.package.PSCBS Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut], Frank E Harrell Jr [ctb] (Weighted quantile estimator adopted from Hmisc::wtd.quantile()) Maintainer: Henrik Bengtsson <henrikb at braju.com> BugReports: https://github.com/HenrikBengtsson/PSCBS/issues License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] URL: https://github.com/HenrikBengtsson/PSCBS NeedsCompilation: no Citation: PSCBS citation info Materials: README NEWS In views: Omics CRAN checks: PSCBS resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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