Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al. (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al. (2025) <doi:10.1146/annurev-marine-032223-024511>.
Version: 0.2.0 Depends: R (≥ 3.5.0) Imports: drc, rlog, stats, utils, dplyr, ggplot2, readxl, glue Suggests: testthat (≥ 3.0.0) Published: 2025-06-06 DOI: 10.32614/CRAN.package.CBASSED50 Author: Yulia Iakovleva [aut], Luigi Colin [aut, cre], Christian Robert Voolstra [aut] Maintainer: Luigi Colin <reefgenomics at gmail.com> License: MIT + file LICENSE NeedsCompilation: no CRAN checks: CBASSED50 results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=CBASSED50 to link to this page.
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