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CRAN: Package limorhyde2

limorhyde2: Quantify Rhythmicity and Differential Rhythmicity in Genomic Data

Fit linear models based on periodic splines, moderate model coefficients using multivariate adaptive shrinkage, then compute properties of the moderated curves.

Version: 0.1.0 Depends: R (≥ 3.6) Imports: abind (≥ 1.4-5), ashr (≥ 2.2-54), checkmate (≥ 2.0.0), data.table (≥ 1.12.8), DESeq2 (≥ 1.30.0), foreach (≥ 1.5.0), HDInterval (≥ 0.2.2), iterators (≥ 1.0.12), limma (≥ 3.42.2), mashr (≥ 0.2.50), pbs (≥ 1.1), zeallot (≥ 0.1.0) Suggests: cowplot (≥ 1.1.1), knitr, doParallel (≥ 1.0.15), ggplot2 (≥ 3.3.5), glue (≥ 1.6.1), qs (≥ 0.24.1), rmarkdown, testthat (≥ 3.0.0) Published: 2023-01-26 DOI: 10.32614/CRAN.package.limorhyde2 Author: Jake Hughey [aut, cre], Dora Obodo [aut], Elliot Outland [aut] Maintainer: Jake Hughey <jakejhughey at gmail.com> License: GPL-2 URL: https://limorhyde2.hugheylab.org, https://github.com/hugheylab/limorhyde2 NeedsCompilation: no Materials: NEWS CRAN checks: limorhyde2 results Documentation: Downloads: Linking:

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