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CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
Regular: ACNE, ActivePathways, ADAPTS, adjclust, agvgd, alakazam, aliases2entrez, Allspice, ampir, AnaCoDa, AnnotationBustR, aroma.cn, babelgene, BarcodingR, BASiNET, bayefdr, BClustLonG, BED, BiasCorrector, bio3d, BioInsight, bioseq, BRINDA, Cascade, CascadeData, CB2, cbioportalR, CePa, CeRNASeek, chromoMap, clustermole, compas, conos, cp4p, cubfits, depthTools, desiR, DGEobj, DGEobj.utils, DiffCorr, diffEnrich, DiPALM, directPA, DIscBIO, DiscreteFDR, DRaWR, driveR, DRomics, dsb, dynwrap, DysPIA, DysPIAData, EMMIXgene, enveomics.R, erah, fbar, FiRE, flippant, ftrCOOL, func2vis, GANPA, GANPAdata, GeneCycle, geneExpressionFromGEO, geno2proteo, genoPlotR, gggenes, glmmSeq, GOxploreR, gprofiler2, graphsim, GSA, hgnc, hommel, hsstan, HTSCluster, ICAMS, iCARH, ICBioMark, ICDS, iCellR, IMIX, immunarch, imp4p, imputeLCMD, imsig, integIRTy, interep, ioncopy, iq, JBrowseR, JSparO, KRIS, krm, leapp, lilikoi, lineup, lineup2, lmQCM, LSPFP, LUCIDus, MAAPER, maGUI, Map2NCBI, markerpen, MCMC.qpcr, metaboData, MetabolicSurv, MetabolomicsBasics, metaMA, metaRNASeq, MetSizeR, mi4p, miic, MINTplates, MiRNAQCD, mpm, mpmi, msigdbr, mutSignatures, NACHO, nanostringr, NBPSeq, net4pg, netgsa, networkABC, NewmanOmics, OlinkAnalyze, OmicNavigator, omicwas, omu, oncoPredict, optBiomarker, OptCirClust, ORIClust, packMBPLSDA, parmigene, pathfindR, pathfindR.data, pathwayTMB, Patterns, pbm, PeakError, PeakSegDisk, PeakSegJoint, PeakSegOptimal, permPATH, phateR, pinfsc50, PINSPlus, POD, popPCR, PQLseq, prioGene, prioritylasso, protti, protViz, prozor, PSCBS, PSSMCOOL, ptm, PTXQC, pwrFDR, rBiasCorrection, RCircos, RcmdrPlugin.depthTools, read.gb, Rediscover, regnet, RGBM, RHclust, riceidconverter, RIdeogram, RNAseqNet, RNentropy, RobustRankAggreg, rPanglaoDB, rSEA, RVA, scBio, sccore, scINSIGHT, scLink, scoper, SCORPIUS, scSorter, scTenifoldKnk, scTenifoldNet, semmcmc, seqgendiff, seqinr, SeuratObject, SIBERG, sigminer, Signac, SignacX, sigora, SIMMS, singleCellHaystack, slfm, SMDIC, SMVar, solvebio, sonicLength, SoupX, ssize.fdr, supclust, SurrogateRegression, TailRank, TCA, TCGAretriever, TcGSA, TGS, tidyestimate, tinyarray, Tmisc, tmod, topologyGSA, toprdata, treefit, VALERIE, valr, VAM, vhica, volcano3D, whitening, wilson, wrMisc, ypssc.
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