An automatic cluster-based annotation pipeline based on evidence-based score by matching the marker genes with known cell markers in tissue-specific cell taxonomy reference database for single-cell RNA-seq data. See Shao X, et al (2020) <doi:10.1016/j.isci.2020.100882> for more details.
Version: 3.2.2 Depends: R (≥ 4.0.0) Imports: Matrix, methods, progress, stats, reshape2 Suggests: rmarkdown, knitr, testthat, prettydoc Published: 2023-04-23 DOI: 10.32614/CRAN.package.scCATCH Author: Xin Shao Maintainer: Xin Shao <xin_shao at zju.edu.cn> License: GPL (≥ 3) URL: https://github.com/ZJUFanLab/scCATCH NeedsCompilation: no Citation: scCATCH citation info Materials: README CRAN checks: scCATCH results Documentation: Reference manual: scCATCH.pdf Vignettes: scCATCH tutorialPlease use the canonical form https://CRAN.R-project.org/package=scCATCH to link to this page.
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