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Showing content from http://cran.rstudio.com/web/packages/lattice/../coalescentMCMC/index.html below:

CRAN: Package coalescentMCMC

coalescentMCMC: MCMC Algorithms for the Coalescent

Flexible framework for coalescent analyses in R. It includes a main function running the MCMC algorithm, auxiliary functions for tree rearrangement, and some functions to compute population genetic parameters. Extended description can be found in Paradis (2020) <doi:10.1201/9780429466700>. For details on the MCMC algorithm, see Kuhner et al. (1995) <doi:10.1093/genetics/140.4.1421> and Drummond et al. (2002) <doi:10.1093/genetics/161.3.1307>.

Version: 0.4-4 Depends: ape, coda, lattice Imports: Matrix, phangorn, splines, stats, utils Published: 2022-04-22 DOI: 10.32614/CRAN.package.coalescentMCMC Author: Emmanuel Paradis [aut, cre, cph] Maintainer: Emmanuel Paradis <Emmanuel.Paradis at ird.fr> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: yes Citation: coalescentMCMC citation info Materials: NEWS In views: Bayesian CRAN checks: coalescentMCMC results Documentation: Reference manual: coalescentMCMC.pdf Vignettes: Coalescent Models
Running coalescentMCMC
Downloads: Package source: coalescentMCMC_0.4-4.tar.gz Windows binaries: r-devel: coalescentMCMC_0.4-4.zip, r-release: coalescentMCMC_0.4-4.zip, r-oldrel: coalescentMCMC_0.4-4.zip macOS binaries: r-release (arm64): coalescentMCMC_0.4-4.tgz, r-oldrel (arm64): coalescentMCMC_0.4-4.tgz, r-release (x86_64): coalescentMCMC_0.4-4.tgz, r-oldrel (x86_64): coalescentMCMC_0.4-4.tgz Old sources: coalescentMCMC archive Linking:

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