Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.
Version: 0.0.5 Depends: methods, utils, grDevices (≥ 3.0.0), graphics (≥ 3.0.0), R (≥ 3.3.0) Imports: ggplot2, sf (≥ 0.6.3), stats (≥ 3.0.2), Biostrings (≥ 2.0.0) Suggests: testthat (≥ 2.0) Published: 2019-06-14 DOI: 10.32614/CRAN.package.SMITIDstruct Author: Jean-Francois Rey [aut, cre] Maintainer: Jean-Francois Rey <jean-francois.rey at inra.fr> BugReports: https://gitlab.paca.inra.fr/SMITID/structR/issues License: GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] URL: https://informatique-mia.inra.fr/biosp/anr-smitid-project, https://gitlab.paca.inra.fr/SMITID/structR NeedsCompilation: no CRAN checks: SMITIDstruct results Documentation: Reference manual: SMITIDstruct.pdf Downloads: Package source: SMITIDstruct_0.0.5.tar.gz Windows binaries: r-devel: SMITIDstruct_0.0.5.zip, r-release: SMITIDstruct_0.0.5.zip, r-oldrel: SMITIDstruct_0.0.5.zip macOS binaries: r-release (arm64): SMITIDstruct_0.0.5.tgz, r-oldrel (arm64): SMITIDstruct_0.0.5.tgz, r-release (x86_64): SMITIDstruct_0.0.5.tgz, r-oldrel (x86_64): SMITIDstruct_0.0.5.tgz Old sources: SMITIDstruct archive Reverse dependencies: Reverse suggests: SMITIDvisu Linking:Please use the canonical form https://CRAN.R-project.org/package=SMITIDstruct to link to this page.
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