Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Version: 3.0.1 Depends: R (≥ 4.0.0), Seurat (≥ 4.3.0.1) Imports: circlize, cli (≥ 3.2.0), cowplot, data.table, dplyr, forcats, ggbeeswarm, ggplot2, ggprism, ggrastr, ggrepel, glue, grDevices, grid, janitor, lifecycle, magrittr, Matrix (≥ 1.5.0), methods, paletteer, patchwork, pbapply, purrr, rlang (≥ 1.1.3), scales, scattermore (≥ 1.2), SeuratObject (≥ 5.0.0), stats, stringi, stringr, tibble, tidyr Suggests: BiocFileCache, ComplexHeatmap, dittoSeq, DropletUtils, ggpubr, hdf5r, knitr, Nebulosa, remotes, reticulate, rliger, rmarkdown, scuttle, tidyselect, qs, viridis Published: 2024-12-18 DOI: 10.32614/CRAN.package.scCustomize Author: Samuel Marsh [aut, cre], Ming Tang [ctb], Velina Kozareva [ctb], Lucas Graybuck [ctb] Maintainer: Samuel Marsh <samuel.marsh at childrens.harvard.edu> BugReports: https://github.com/samuel-marsh/scCustomize/issues License: GPL (≥ 3) URL: https://github.com/samuel-marsh/scCustomize, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431 NeedsCompilation: no Materials: README NEWS CRAN checks: scCustomize results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=scCustomize to link to this page.
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