Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots <doi:10.1093/bioadv/vbaf006>.
Version: 0.3.8 Depends: R (≥ 3.5) Imports: AnnotationFilter, BiocGenerics, cowplot, dplyr, ensembldb, GenomeInfoDb, GenomicRanges, gggrid, ggplot2, ggrepel, graphics, grDevices, grid, IRanges, LDlinkR, memoise, plotly, rlang, rtracklayer, zoo Suggests: AnnotationHub, EnsDb.Hsapiens.v75, knitr, rmarkdown Published: 2025-03-03 DOI: 10.32614/CRAN.package.locuszoomr Author: Myles Lewis [aut, cre] Maintainer: Myles Lewis <myles.lewis at qmul.ac.uk> BugReports: https://github.com/myles-lewis/locuszoomr/issues License: GPL (≥ 3) URL: https://github.com/myles-lewis/locuszoomr NeedsCompilation: no Language: en-gb Citation: locuszoomr citation info Materials: README NEWS CRAN checks: locuszoomr results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=locuszoomr to link to this page.
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