Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Version: 1.7.6 Imports: ggplot2 (≥ 3.3.2), aweek (≥ 0.2.0) Suggests: magrittr, outbreaks, testthat, vdiffr, knitr, rmarkdown, scales, cowplot Published: 2025-06-19 DOI: 10.32614/CRAN.package.incidence Author: Thibaut Jombart [aut], Zhian N. Kamvar [aut], Rich FitzJohn [aut], Tim Taylor [cre], Jun Cai [ctb], Sangeeta Bhatia [ctb], Jakob Schumacher [ctb], Juliet R.C. Pulliam [ctb] Maintainer: Tim Taylor <tim.taylor at hiddenelephants.co.uk> BugReports: https://github.com/reconhub/incidence/issues License: MIT + file LICENSE URL: https://www.repidemicsconsortium.org/incidence/ NeedsCompilation: no Citation: incidence citation info Materials: NEWS In views: Epidemiology CRAN checks: incidence results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=incidence to link to this page.
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