Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.
Version: 0.6.15 Depends: R (≥ 3.1) Imports: arrayhelpers (≥ 1.1.0), autothresholdr (≥ 1.3.11), checkmate (≥ 1.9.3), doParallel, dplyr, filesstrings (≥ 3.2.4), foreach, ijtiff (≥ 2.2), iterators, magrittr (≥ 1.5), parallel, plyr, purrr, Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7), rlang (≥ 0.3.3), stringr (≥ 1.4), tools, withr (≥ 2.1) LinkingTo: Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7) Suggests: abind, covr, ggplot2, glue (≥ 1.3.0), graphics, gridExtra, knitr, lattice, MASS, matrixStats, mgcv, pacman, R.utils, rmarkdown, spelling, testthat (≥ 3.0), tidyr Published: 2023-03-04 DOI: 10.32614/CRAN.package.detrendr Author: Rory Nolan [aut, cre], Luis Alvarez [ctb, cph], Sergi Padilla-Parra [ctb, ths, cph] Maintainer: Rory Nolan <rorynoolan at gmail.com> BugReports: https://github.com/rorynolan/detrendr/issues License: BSD_3_clause + file LICENSE URL: https://rorynolan.github.io/detrendr/, https://github.com/rorynolan/detrendr#readme NeedsCompilation: yes SystemRequirements: GNU make Language: en-US Citation: detrendr citation info Materials: README NEWS CRAN checks: detrendr results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=detrendr to link to this page.
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