Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) <doi:10.1093/molbev/msu121>, Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
Version: 1.4.5 Depends: R (≥ 3.0.0) Imports: Rcpp (≥ 0.12.8), stats, graphics, ape LinkingTo: Rcpp Suggests: knitr, testthat, purrr, coda, grDevices, lattice, rmarkdown Published: 2021-04-20 DOI: 10.32614/CRAN.package.TransPhylo Author: Xavier Didelot [aut, cre], Yuanwei Xu [ctb] Maintainer: Xavier Didelot <xavier.didelot at gmail.com> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: yes SystemRequirements: C++11 Citation: TransPhylo citation info Materials: README In views: Epidemiology CRAN checks: TransPhylo results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=TransPhylo to link to this page.
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