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CRAN: Package TPAC

TPAC: Tissue-Adjusted Pathway Analysis of Cancer (TPAC)

Contains logic for single sample gene set testing of cancer transcriptomic data with adjustment for normal tissue-specificity. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.

Version: 0.2.0 Depends: R (≥ 3.6.0) Imports: data.table, MASS, TPACData Published: 2023-10-26 DOI: 10.32614/CRAN.package.TPAC Author: H. Robert Frost [aut, cre] Maintainer: H. Robert Frost <rob.frost at dartmouth.edu> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: no Materials: NEWS CRAN checks: TPAC results Documentation: Reference manual: TPAC.pdf Vignettes: TCGA liver cancer using MSigDB Hallmark collection example (source)
Downloads: Package source: TPAC_0.2.0.tar.gz Windows binaries: r-devel: TPAC_0.2.0.zip, r-release: TPAC_0.2.0.zip, r-oldrel: TPAC_0.2.0.zip macOS binaries: r-release (arm64): TPAC_0.2.0.tgz, r-oldrel (arm64): TPAC_0.2.0.tgz, r-release (x86_64): TPAC_0.2.0.tgz, r-oldrel (x86_64): TPAC_0.2.0.tgz Linking:

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