A toolkit for making antigenic maps from immunological assay data, in order to quantify and visualize antigenic differences between different pathogen strains as described in Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World Health Organization influenza vaccine strain selection process. Additional functions allow for the diagnostic evaluation of antigenic maps and an interactive viewer is provided to explore antigenic relationships amongst several strains and incorporate the visualization of associated genetic information.
Version: 1.2.9 Depends: R (≥ 4.0) Imports: Rcpp, jsonlite, ks, brotli, shiny, shinyFiles, shinyjs, htmlwidgets, ggplot2 (≥ 3.0.0), htmltools, rmarchingcubes, shape, ellipsis, MASS, magrittr, igraph, dplyr, vctrs, rlang LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEnsmallen, rapidjsonr Suggests: testthat, r3js, knitr, rmarkdown, rstudioapi, plotly, geometry, readxl, stringr, tibble, tidyr, base64enc, lifecycle, MCMCpack, spelling Published: 2023-11-30 DOI: 10.32614/CRAN.package.Racmacs Author: Sam Wilks [aut, cre] Maintainer: Sam Wilks <sw463 at cam.ac.uk> BugReports: https://github.com/acorg/Racmacs/issues License: AGPL-3 URL: https://acorg.github.io/Racmacs/, https://github.com/acorg/Racmacs/ NeedsCompilation: yes Language: en-GB Materials: README NEWS CRAN checks: Racmacs results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=Racmacs to link to this page.
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