Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.
Version: 2.4-5 Depends: R (≥ 3.1.0) Imports: Rcpp, parallel, grid, graphics, grDevices, stats, utils LinkingTo: Rcpp Suggests: XML, RCurl, lattice, ncdf4, igraph, bigmemory, knitr, rmarkdown, testthat (≥ 0.9.1), httr, msa, Biostrings Published: 2024-10-29 DOI: 10.32614/CRAN.package.bio3d Author: Barry Grant [aut, cre], Xin-Qiu Yao [aut], Lars Skjaerven [aut], Julien Ide [aut] Maintainer: Barry Grant <bjgrant at ucsd.edu> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] URL: http://thegrantlab.org/bio3d/, https://bitbucket.org/Grantlab/bio3d/ NeedsCompilation: yes Citation: bio3d citation info Materials: README NEWS In views: Omics CRAN checks: bio3d results Documentation: Downloads: Reverse dependencies: Reverse depends: Bios2cor Reverse imports: aLFQ, compas, EnvNJ, orthGS, ProteinGymR, ptm, r3dmol, rPDBapi, SOMMD Reverse suggests: AlphaMissenseR, AntibodyForests, factR Linking:Please use the canonical form https://CRAN.R-project.org/package=bio3d to link to this page.
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