Simulate DNA sequences for the node substitution model. In the node substitution model, substitutions accumulate additionally during a speciation event, providing a potential mechanistic explanation for substitution rate variation. This package provides tools to simulate such a process, simulate a reference process with only substitutions along the branches, and provides tools to infer phylogenies from alignments. More information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
Version: 1.2.9 Depends: ape, Rcpp Imports: beastier, beautier, DDD, geiger, lifecycle, pbapply, phangorn, phylobase, rappdirs, Rmpfr, stringr, testit, tibble, tracerer LinkingTo: Rcpp Suggests: dplyr, ggplot2, knitr, magrittr, nLTT, rmarkdown, RPANDA, testthat, tidyr, TreeSim Published: 2025-05-06 DOI: 10.32614/CRAN.package.nodeSub Author: Thijs Janzen [aut, cre] Maintainer: Thijs Janzen <thijsjanzen at gmail.com> BugReports: https://github.com/thijsjanzen/nodeSub/issues License: GPL-3 URL: https://github.com/thijsjanzen/nodeSub NeedsCompilation: yes Materials: README CRAN checks: nodeSub results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=nodeSub to link to this page.
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