R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.
Version: 1.0.13 Depends: R (≥ 4.1.0), tensorflow (≥ 2.2.0) Imports: BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, rBayesianOptimization, rlang, BiocGenerics LinkingTo: Rcpp, RcppArmadillo Suggests: knitr, rmarkdown, markdown Published: 2023-09-14 DOI: 10.32614/CRAN.package.DCLEAR Author: Il-Youp Kwak [aut, cre], Wuming Gong [aut] Maintainer: Il-Youp Kwak <ikwak2 at cau.ac.kr> License: GPL-3 URL: https://github.com/ikwak2/DCLEAR NeedsCompilation: yes Materials: README CRAN checks: DCLEAR results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=DCLEAR to link to this page.
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