Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
Version: 1.2.0 Depends: R (≥ 4.1.0) Imports: ape, dplyr, ggplot2, ggtree, igraph, parallelDist, patchwork, phangorn, Rcpp, reshape2, RcppParallel, RhpcBLASctl, stringr, tidygraph LinkingTo: Rcpp, RcppArmadillo, RcppParallel Suggests: testthat (≥ 3.0.0) Published: 2023-06-15 DOI: 10.32614/CRAN.package.scistreer Author: Teng Gao [cre, aut], Evan Biederstedt [aut], Peter Kharchenko [aut], Yufeng Wu [aut] Maintainer: Teng Gao <tgaoteng at gmail.com> License: GPL-3 URL: https://github.com/kharchenkolab/scistreer, https://kharchenkolab.github.io/scistreer/ NeedsCompilation: yes SystemRequirements: GNU make Materials: README CRAN checks: scistreer results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=scistreer to link to this page.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4