Analysis of DNA copy number in single cells using custom genome-wide targeted DNA sequencing panels for the Mission Bio Tapestri platform. Users can easily parse, manipulate, and visualize datasets produced from the automated 'Tapestri Pipeline', with support for normalization, clustering, and copy number calling. Functions are also available to deconvolute multiplexed samples by genotype and parsing barcoded reads from exogenous lentiviral constructs.
Version: 1.0.1 Depends: R (≥ 3.6), SingleCellExperiment Imports: circlize, cli, ComplexHeatmap, dbscan, dplyr, fitdistrplus, GenomicRanges, ggplot2, gtools, IRanges, magrittr, methods, purrr, rhdf5, rlang, S4Vectors, stats, SummarizedExperiment, tibble, tidyr, umap, viridisLite Suggests: Biostrings, knitr, rmarkdown, Rsamtools, testthat (≥ 3.0.0) Published: 2023-09-07 DOI: 10.32614/CRAN.package.karyotapR Author: Joseph Mays [aut, cre, cph] Maintainer: Joseph Mays <josephcmays at gmail.com> BugReports: https://github.com/joeymays/karyotapR/issues License: MIT + file LICENSE URL: https://github.com/joeymays/karyotapR, http://joeymays.xyz/karyotapR/ NeedsCompilation: no Materials: README, NEWS CRAN checks: karyotapR results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=karyotapR to link to this page.
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