Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combines different packages to have an ultimate package for both data analyses and visualization of 'ATAC-seq' data. Methods are described in 'Karakaslar et al.' (2021) <doi:10.1101/2021.03.05.434143>.
Version: 0.2.3 Depends: R (≥ 4.0.0) Imports: ChIPseeker, DESeq2, dplyr, edgeR, fgsea, GenomicRanges, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, ggplot2, ggrepel, grDevices, limma, utils, pheatmap, preprocessCore, RColorBrewer, sva, writexl Suggests: knitr, rmarkdown, markdown Published: 2022-05-18 DOI: 10.32614/CRAN.package.cinaR Author: Onur Karakaslar [aut, cre], Duygu Ucar [aut] Maintainer: Onur Karakaslar <eonurkara at gmail.com> BugReports: https://github.com/eonurk/cinaR/issues/ License: GPL-3 URL: https://github.com/eonurk/cinaR/ NeedsCompilation: no Materials: README, NEWS CRAN checks: cinaR resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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