Showing content from http://cran.rstudio.com/web/packages/Rcpp/../binsegRcpp/../ggplot2/../SpatialDDLS/news/news.html below:
NEWS
SpatialDDLS 0.1.0 (2023-04-08)
- Added a
NEWS.md file to track changes.
SpatialDDLS 0.2.0 (2023-10-04)
- Added a vignette explaining HDF5 file usage (hdf5Backend.Rmd vignette).
- Mixed transcriptional profiles are now stored as raw counts rather than normalized values in order to make calculations more transparent.
- Scale factor for normalization can be chosen (10e3 is now the default option).
SpatialDDLS 1.0.0 (2023-12-05)
- Regularization of predicted cell proportions incorporated. Functions and classes relying on the deconvSpatialDDLS function have been modified.
- Added a set of functions for clustering analysis based on predicted cell proportions (spatialClustering.R file).
- Added a module for neural network interpretation based on the vanilla gradient algorithm (interGradientsDL.R file).
- Changes in default parameters and vignette updated.
SpatialDDLS 1.0.1 (2024-02-07)
- Change in HDF5 file usage: new version of the HDF5Array package does not support âfor.useâ argument.
- In createSpatialDDLSobject, included the sc.log.FC parameter to optionally choose if filtering genes according to logFC.
SpatialDDLS 1.0.2 (2024-03-21)
- Included two parameters to control python and tensorflow versions in the installTFpython function.
- The installTFpython function now installs python 3.8 by default.
SpatialDDLS 1.0.3 (2024-10-28)
- SingleCellExperiment adds a saveRDS S3 generics in the new BioC version. To avoid incompatibilities, it is not completely loaded anymore.
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