Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.
Version: 1.0.0 Depends: R (≥ 4.1.0) Imports: data.table, dplyr, GenomicRanges, ggplot2, glue, IRanges, methods, patchwork, Rcpp, stringr, tibble, zoo LinkingTo: Rcpp, RcppArmadillo, roptim Suggests: ggrastr, testthat Published: 2023-10-25 DOI: 10.32614/CRAN.package.hahmmr Author: Teng Gao [aut, cre], Evan Biederstedt [aut], Peter Kharchenko [aut] Maintainer: Teng Gao <tgaoteng at gmail.com> License: MIT + file LICENSE NeedsCompilation: yes Materials: README CRAN checks: hahmmr results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=hahmmr to link to this page.
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