Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
Version: 1.3 Depends: R (≥ 3.2.0), ape (≥ 5.3-11) Imports: graphics, utils, methods Suggests: rgl, snpStats, adegenet Published: 2023-12-13 DOI: 10.32614/CRAN.package.pegas Author: Emmanuel Paradis [aut, cre, cph], Thibaut Jombart [aut, cph], Zhian N. Kamvar [aut, cph], Brian Knaus [aut, cph], Klaus Schliep [aut, cph], Alastair Potts [aut, cph], David Winter [aut, cph] Maintainer: Emmanuel Paradis <Emmanuel.Paradis at ird.fr> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] URL: https://emmanuelparadis.github.io/pegas.html NeedsCompilation: yes Citation: pegas citation info Materials: NEWS CRAN checks: pegas results Documentation: Downloads: Reverse dependencies: Reverse depends: StAMPP Reverse imports: geneHapR, graph4lg, HACSim, mmod, PopGenReport, poppr, RAINBOWR, spider Reverse suggests: adegenet, dartR, dartR.base, hierfstat Linking:Please use the canonical form https://CRAN.R-project.org/package=pegas to link to this page.
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