Implementation of the automatic shift detection method for Brownian Motion (BM) or OrnsteinâUhlenbeck (OU) models of trait evolution on phylogenies. Some tools to handle equivalent shifts configurations are also available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.
Version: 1.8.0 Depends: ape (≥ 5.3), Matrix (≥ 1.2.18), R (≥ 3.6.0) Imports: capushe (≥ 1.1.1), foreach (≥ 1.4.3), gglasso (≥ 1.4), glmnet (≥ 2.0.5), graphics (≥ 3.6.0), grDevices (≥ 3.6.0), LINselect (≥ 1.1.1), MASS (≥ 7.3.45), methods (≥ 3.6.0), plyr (≥ 1.8.4), Rcpp (≥ 1.0.2), robustbase (≥ 0.92.6), stats (≥ 3.6.0), utils (≥ 3.6.0) LinkingTo: Rcpp, RcppArmadillo Suggests: combinat (≥ 0.0.8), doParallel (≥ 1.0.10), phytools (≥ 0.5.38), testthat (≥ 1.0.2), TreeSim (≥ 2.2), knitr, rmarkdown Published: 2025-02-14 DOI: 10.32614/CRAN.package.PhylogeneticEM Author: Paul Bastide [aut, cre], Mahendra Mariadassou [ctb] Maintainer: Paul Bastide <paul.bastide at m4x.org> BugReports: https://github.com/pbastide/PhylogeneticEM/issues License: GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] URL: https://github.com/pbastide/PhylogeneticEM, https://pbastide.github.io/PhylogeneticEM/ NeedsCompilation: yes Citation: PhylogeneticEM citation info Materials: NEWS CRAN checks: PhylogeneticEM resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4