Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.
Version: 0.1.1 Imports: stats, Biostrings, Rcpp LinkingTo: Rcpp Published: 2024-09-27 DOI: 10.32614/CRAN.package.DNAmotif Author: Subham Ghosh [aut, cre], UB Angadi [aut], Md Yeasin [aut], Dipro Sinha [aut], Saikath Das [aut], Mir Asif Iquebal [aut], Sarika [aut] Maintainer: Subham Ghosh <search4aghosh at gmail.com> License: GPL-3 NeedsCompilation: yes CRAN checks: DNAmotif results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=DNAmotif to link to this page.
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