Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and professional omics data analysis.
Version: 0.1.3 Depends: R (≥ 4.2.0) Imports: pcutils (≥ 0.2.5), dplyr, ggplot2 (≥ 3.2.0), vegan, magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats, tibble, utils, ggpubr, ggnewscale, ade4, scales Suggests: picante, httr, NST, permute, aplot, pheatmap, MASS, Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork, tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma, ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown, MetaNet, showtext, jsonlite, prettydoc, readxl, clipr, zetadiv, ggforce Published: 2024-12-02 DOI: 10.32614/CRAN.package.pctax Author: Chen Peng [aut, cre] Maintainer: Chen Peng <pengchen2001 at zju.edu.cn> BugReports: https://github.com/Asa12138/pctax/issues License: GPL-3 URL: https://github.com/Asa12138/pctax NeedsCompilation: no Citation: pctax citation info Materials: README, NEWS CRAN checks: pctax results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=pctax to link to this page.
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