'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.
Version: 2.3.4 Depends: beautier (≥ 2.6.12), beastier (≥ 2.5), mauricer (≥ 2.5.2), R (≥ 3.5.0), tracerer Imports: phangorn, rlang (≥ 1.1.0), stringr, xml2 Suggests: ape, ggplot2, knitr, lintr, nLTT, rappdirs, rmarkdown, spelling, testthat (≥ 2.1.0) Published: 2024-06-25 DOI: 10.32614/CRAN.package.babette Author: Richèl J.C. Bilderbeek [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), Jason Griffiths [ctb], Olivier Roy [ctb], Giovanni Laudanno [ctb] Maintainer: Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com> BugReports: https://github.com/ropensci/babette/issues License: GPL-3 URL: https://docs.ropensci.org/babette/ (website), https://github.com/ropensci/babette NeedsCompilation: no SystemRequirements: BEAST2 (https://www.beast2.org/) Language: en-US Citation: babette citation info In views: Phylogenetics CRAN checks: babette results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=babette to link to this page.
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