Provides functions to specify, fit and visualize nested partially-latent class models ( Wu, Deloria-Knoll, Hammitt, and Zeger (2016) <doi:10.1111/rssc.12101>; Wu, Deloria-Knoll, and Zeger (2017) <doi:10.1093/biostatistics/kxw037>; Wu and Chen (2021) <doi:10.1002/sim.8804>) for inference of population disease etiology and individual diagnosis. In the motivating Pneumonia Etiology Research for Child Health (PERCH) study, because both quantities of interest sum to one hundred percent, the PERCH scientists frequently refer to them as population etiology pie and individual etiology pie, hence the name of the package.
Version: 1.0.3 Depends: R (≥ 4.3.0) Imports: rjags (≥ 4-6), R2jags (≥ 0.5), lubridate (≥ 1.3), binom (≥ 1.1), coda (≥ 0.16), robCompositions (≥ 2.0.3), ggplot2 (≥ 1.0), ggpubr (≥ 0.4.0), gridExtra (≥ 2.0), reshape2 (≥ 1.4), mgcv (≥ 1.8-6), mvbutils (≥ 2.7.4.1), shinyFiles (≥ 0.6), shinydashboard (≥ 0.5.1), stats, utils, abind Suggests: spelling, knitr, testthat, rmarkdown, covr, knitcitations, sf Published: 2024-01-30 DOI: 10.32614/CRAN.package.baker Author: Zhenke Wu [cre, aut, cph], Scott Zeger [aut], John Muschelli [ctb], Irena Chen [ctb] Maintainer: Zhenke Wu <zhenkewu at gmail.com> BugReports: https://github.com/zhenkewu/baker/issues License: MIT + file LICENSE URL: https://github.com/zhenkewu/baker, https://zhenkewu.com/baker/ NeedsCompilation: no SystemRequirements: JAGS (>= 4.3.2) (http://mcmc-jags.sourceforge.net) Language: en-US Citation: baker citation info Materials: README, NEWS CRAN checks: baker results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=baker to link to this page.
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