Construction of genetic maps in autopolyploid full-sib populations. Uses pairwise recombination fraction estimation as the first source of information to sequentially position allelic variants in specific homologous chromosomes. For situations where pairwise analysis has limited power, the algorithm relies on the multilocus likelihood obtained through a hidden Markov model (HMM). For more detail, please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378> and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.
Version: 0.4.1 Depends: R (≥ 4.0.0) Imports: Rcpp (≥ 0.12.6), RcppParallel, RCurl, fields, ggpubr, ggsci, rstudioapi, plot3D, dplyr, crayon, cli, magrittr, reshape2, ggplot2, smacof, princurve, dendextend, vcfR, zoo, plotly LinkingTo: Rcpp, RcppParallel Suggests: testthat, updog, fitPoly, polymapR, AGHmatrix, gatepoints, knitr, rmarkdown, stringr Published: 2024-03-06 DOI: 10.32614/CRAN.package.mappoly Author: Marcelo Mollinari [aut, cre], Gabriel Gesteira [aut], Cristiane Taniguti [aut], Jeekin Lau [aut], Oscar Riera-Lizarazu [ctb], Guilhereme Pereira [ctb], Augusto Garcia [ctb], Zhao-Bang Zeng [ctb], Katharine Preedy [ctb, cph] (MDS ordering algorithm), Robert Gentleman [cph] (C code for MLE optimization in src/pairwise_estimation.cpp), Ross Ihaka [cph] (C code for MLE optimization in src/pairwise_estimation.cpp), R Foundation [cph] (C code for MLE optimization in src/pairwise_estimation.cpp), R-core [cph] (C code for MLE optimization in src/pairwise_estimation.cpp) Maintainer: Marcelo Mollinari <mmollin at ncsu.edu> BugReports: https://github.com/mmollina/MAPpoly/issues License: GPL-3 URL: https://github.com/mmollina/MAPpoly NeedsCompilation: yes SystemRequirements: GNU make Citation: mappoly citation info Materials: README NEWS In views: Agriculture CRAN checks: mappoly results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=mappoly to link to this page.
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