Methods to detect genetic markers involved in biological adaptation. 'pcadapt' provides statistical tools for outlier detection based on Principal Component Analysis. Implements the method described in (Luu, 2016) <doi:10.1111/1755-0998.12592> and later revised in (Privé, 2020) <doi:10.1093/molbev/msaa053>.
Version: 4.4.0 Imports: bigutilsr (≥ 0.3), data.table, ggplot2, magrittr, mmapcharr (≥ 0.3), Rcpp (≥ 0.12.8), RSpectra LinkingTo: mmapcharr, Rcpp, rmio Suggests: plotly, shiny, spelling, testthat, vcfR Published: 2024-09-24 DOI: 10.32614/CRAN.package.pcadapt Author: Keurcien Luu [aut], Michael Blum [aut], Florian Privé [aut, cre], Eric Bazin [ctb], Nicolas Duforet-Frebourg [ctb] Maintainer: Florian Privé <florian.prive.21 at gmail.com> BugReports: https://github.com/bcm-uga/pcadapt/issues License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] URL: https://github.com/bcm-uga/pcadapt NeedsCompilation: yes Language: en-US Citation: pcadapt citation info Materials: README NEWS CRAN checks: pcadapt results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=pcadapt to link to this page.
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