Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
Version: 1.3.4 Depends: R (≥ 3.5.0) Imports: Rcpp (≥ 0.12.16), metap, magrittr, dplyr, tibble, stringr, ggplot2, tidyr, glue, pheatmap, tools, readr, parallel, R.utils LinkingTo: Rcpp, RcppArmadillo Suggests: testthat, knitr, rmarkdown Published: 2020-07-24 DOI: 10.32614/CRAN.package.CB2 Author: Hyun-Hwan Jeong [aut, cre] Maintainer: Hyun-Hwan Jeong <jeong.hyunhwan at gmail.com> License: MIT + file LICENSE NeedsCompilation: yes Materials: README In views: Omics CRAN checks: CB2 results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=CB2 to link to this page.
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