Functions for the computation of F-, f- and D-statistics (e.g., Fst, hierarchical F-statistics, Patterson's F2, F3, F3*, F4 and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in TreeMix, BayPass and SelEstim format).
Version: 3.0.0 Depends: R (≥ 3.0) Imports: Rcpp (≥ 1.0.5), methods, data.table, utils, foreach, doParallel, parallel, DiagrammeR, ape, stats, Ryacas, Matrix, RcppProgress, progress, nnls LinkingTo: Rcpp, RcppProgress Published: 2024-11-23 DOI: 10.32614/CRAN.package.poolfstat Author: Mathieu Gautier [aut, cre] Maintainer: Mathieu Gautier <mathieu.gautier at inrae.fr> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: yes Citation: poolfstat citation info Materials: ChangeLog CRAN checks: poolfstat results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=poolfstat to link to this page.
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