The method models RNA-seq reads using a mixture of 3 beta-binomial distributions to generate posterior probabilities for genotyping bi-allelic single nucleotide polymorphisms. Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J. Lewis and Chris Wallace (2023) <doi:10.1093/bioinformatics/btad393> "BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing."
Version: 1.0.0 Depends: R (≥ 3.4.0) Imports: methods, Rcpp (≥ 0.12.0), rstan (≥ 2.18.1), R.utils, data.table, rmutil LinkingTo: BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) Suggests: knitr, rmarkdown Published: 2023-07-06 DOI: 10.32614/CRAN.package.bbmix Author: Elena Vigorito [aut, cre], Chris Wallace [aut] Maintainer: Elena Vigorito <elena.vigorito at mrc-bsu.cam.ac.uk> License: GPL-2 NeedsCompilation: yes SystemRequirements: GNU make Materials: README CRAN checks: bbmix results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=bbmix to link to this page.
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