A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>). The main tools are: (1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists; (2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces; (3) 'g:Orth' - orthology search across species; (4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects. This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.
Version: 0.2.3 Depends: R (≥ 3.5) Imports: jsonlite, RCurl, ggplot2, plotly, tidyr (≥ 1.0.0), crosstalk, grDevices, gridExtra, grid, viridisLite, dplyr Suggests: knitr, rmarkdown, prettydoc Published: 2024-02-23 DOI: 10.32614/CRAN.package.gprofiler2 Author: Liis Kolberg, Uku Raudvere Maintainer: Liis Kolberg <liis.kolberg at ut.ee> BugReports: https://biit.cs.ut.ee/gprofiler/page/contact License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: no Citation: gprofiler2 citation info In views: Omics CRAN checks: gprofiler2 results Documentation: Downloads: Reverse dependencies: Reverse imports: bulkAnalyseR, ClustAssess, DFD, enrichViewNet, famat, GWENA, MultiRNAflow, orthogene, PRONE, RCAS, scMappR, UniprotR Reverse suggests: clustifyr, HPiP, knowYourCG, OmnipathR, rliger Linking:Please use the canonical form https://CRAN.R-project.org/package=gprofiler2 to link to this page.
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