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CRAN: Package ontologySimilarity

ontologySimilarity: Calculating Ontological Similarities

Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.

Version: 2.7 Depends: R (≥ 3.5.0) Imports: Rcpp (≥ 1.0.0), ontologyIndex (≥ 2.0) LinkingTo: Rcpp Suggests: knitr, rmarkdown, paintmap Published: 2024-03-29 DOI: 10.32614/CRAN.package.ontologySimilarity Author: Daniel Greene Maintainer: Daniel Greene <dg333 at cam.ac.uk> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: yes CRAN checks: ontologySimilarity results Documentation: Reference manual: ontologySimilarity.html , ontologySimilarity.pdf Vignettes: Gene Ontology data objects (source, R code)
Examples (source, R code)
Introduction (source, R code)
Downloads: Package source: ontologySimilarity_2.7.tar.gz Windows binaries: r-devel: ontologySimilarity_2.7.zip, r-release: ontologySimilarity_2.7.zip, r-oldrel: ontologySimilarity_2.7.zip macOS binaries: r-release (arm64): ontologySimilarity_2.7.tgz, r-oldrel (arm64): ontologySimilarity_2.7.tgz, r-release (x86_64): ontologySimilarity_2.7.tgz, r-oldrel (x86_64): ontologySimilarity_2.7.tgz Old sources: ontologySimilarity archive Reverse dependencies: Reverse imports: SimReg Linking:

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